Section: Software and Platforms

C3Part & Isofun

Participants : Frédéric Boyer, Yves-Pol Deniélou, Anne Morgat [EPI, ext. member] , Marie-France Sagot [EPI] , Alain Viari [EPI, Contact, alain.viari@inria.fr] .

The C3Part / Isofun package implements a generic approach to the local alignment of two or more graphs representing biological data, such as genomes, metabolic pathways or protein-protein interactions, in order to infer a functional coupling between them. It is based on the notion of “common connected components” between graphs.http://www.inrialpes.fr/helix/people/viari/lxgraph/index.html